Eukaryotic orthologous groups kog
WebA total of 18,917 isoforms were annotated to KEGG database and classified to 138 biological pathways. In total, 10,822 simple sequence repeat (SSRs) and 11,319 resistance (R) gene were classified to 18 types, and 3947 transcription factors (TFs) were identified in full-length transcriptome analysis. WebFeb 18, 2024 · EuKaryotic Orthologous Groups (KOG) class enrichment analysis for P. indica DEGs under salt stress. Bars represent the number of unigenes for each KOG class (y-axis) found in the transcriptome....
Eukaryotic orthologous groups kog
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WebJul 1, 2007 · NCBI euKaryotic Orthologous Group database (KOG) contains seven fully … WebApr 17, 2014 · Detailed analysis of the KOGs revealed various trends in the evolution of …
WebFeb 1, 2024 · Clusters of Eukaryotic Orthologous Groups (KOG) classification of unigenes from Muraenesox cinereus. The coding sequences (CDS) in unigenes were predicted by TransDecoder software ( Lee et al., 2015 ). Functional annotation of the unigenes was performed using the Swiss-Prot database by using Blastx with an E-value … WebSep 11, 2003 · The eukaryotic orthologous groups (KOGs) include proteins from 7 …
WebMay 19, 2024 · Functional classification of these unigenes was determined by searching against the Gene Ontology (GO), eukaryotic orthologous groups (KOG), and the Kyoto Encyclopedia of Genes and Genomes (KEGG) databases. We identified a total of 102 olfactory-related genes: 21 OBPs, 18 CSPs, 43 ORs, 18 IRs, and 2 SNMPs. The eu k aryotic o rthologous g roups (KOGs) include proteins from 7 eukaryotic genomes: three animals (the nematode Caenorhabditis elegans, the fruit fly Drosophila melanogaster and Homo sapiens ), one plant, Arabidopsis thaliana, two fungi ( Saccharomyces cerevisiae and Schizosaccharomyces … See more To add a new species to the COG system, the annotated protein sequences from the respective genome were compared to the proteins in the COG database by using the BLAST program and assigned to pre-existing COGs by … See more Phyletic pattern search can be employed for preliminary assessment of specific functional and evolutionary hypotheses. With the increased … See more Eukaryotic KOGs were constructed from annotated proteins encoded in the genomes of three animals (Homo sapiens [32], the fruit fly Drosophila melanogaster [33], and the nematode Caenorhabditis elegans) [34], the … See more
Weborthologousの実際の意味・ニュアンス (オーソログ、オーソロガス、オルソログ)を理 …
WebJan 1, 2006 · The following functional databases can be used for gene annotation analysis: Clusters of Orthologous Groups of proteins (COG) [32], Kyoto Encyclopedia of Genes and Genomes (KEGG) [33],... cooler tote factoriesWebMay 19, 2024 · Functional classification of these unigenes was determined by searching against the Gene Ontology (GO), eukaryotic orthologous groups (KOG), and the Kyoto Encyclopedia of Genes and Genomes … cooler totes bulkWebOct 13, 2024 · Eukaryotic orthologous group (KOG) analysis revealed that changes in cytoskeleton and energy production and conversion functions dominated during cold storage, degrading the myofibril and connective tissue structures and the physicochemical performance of muscle tissues. This study presents deep insights into the protein … family nursing friedman 5th edition ebookWebMay 17, 2011 · Here, we extended the analysis to all Eukaryotic Clusters of Orthologous Groups (KOG) available in STRING. Our goal here is to evaluate the evolutionary plasticity and conservation of an orthologous group according to the distribution of their components ( i.e. orthologous and paralogous proteins). cooler totes wholesaleWebApr 23, 2024 · In total, 23139 unigenes were obtained using the Dendrobium catenatum genome data. Of these, 10398 were annotated in the Gene Ontology (GO) database, 4203 were annotated in the KEGG database, and 10917 were annotated in the EuKaryotic Orthologous Groups (KOG) database. cooler tote bag shoulderWebTerms and conditions apply. Eukaryotic Orthologous Groups (KOG) protein classifications for differentially expressed genes (DEGs) in KMF and KMA. Capital letters on the x-axis represent the KOG ... family nursing friedman 5th editionWebMay 11, 2024 · Eukaryotic Orthologous Groups were delineated by comparing protein sequences encoded in complete genomes, thus representing major phylogenetic lineages. Each KOG consists of individual orthologous proteins or orthologous sets of paralogs from at least three lineages. family nursing diagnosis list